Breitwieser L, Hesam A, de Montigny J, Vavourakis V, Iosif A, Jennings J, Kaiser M, Manca M, Di Meglio A, Al-Ars Z, Rademakers F, Mutlu O, Bauer R. BioDynaMo: a modular platform for high-performance agent-based simulation. Bioinformatics. 2022;38(2):453–60. doi: 10.1093/bioinformatics/btab649.Â
PMID: 34529036; PMCID: PMC8723141.
We recommend specifying the exact BioDynaMo version used in the methods section.Â
For example: We use BioDynaMo v1.05.63-e327e53c (doi: 10.1093/bioinformatics/btab649) for all simulations in this article.
The version can be obtained by executing biodynamo --version and can be interpreted as follows: vMAJOR.MINOR.PATCH-SHA SHA is the git commit hash that can be used to check out the exact BioDynaMo version in our git repository with git checkout SHA